DoKyoung Lee
· Cavanah Chair and ProfessorVerifiedUniversity of Illinois Urbana-Champaign · Soil and Crop Sciences
Active 2006–2026
Research topics
- Environmental science
- Mathematics
- Machine Learning
- Biology
- Geology
- Computer Science
- Biotechnology
- Chemistry
- Ecology
- Pulp and paper industry
- Waste management
- Agronomy
- Mechanics
- Soil science
- Geotechnical engineering
- Remote sensing
Selected publications
Illinois Data Bank · 2026-01-01
datasetOpen accessSenior authorOil sorghum (OS) has been developed by engineering grain (TX430) and sweet (Ramada) genetic backgrounds to accumulate triacylglycerols (TAG) in vegetative tissues as an energy-dense feedstock for sustainable aviation fuel (SAF) and other biofuels. This study evaluated two TX430 OS lines (TxHO-2, TxHO-3) and two Ramada OS lines (RmHO-1, RmHO-2) alongside wild-type (WT) lines in NE and IL over 2 years (2023–2024) to quantify genotype × environment effects on agronomic performance and TAG accumulation. Across four environments, TX430 OS lines showed average TAG concentrations of 15.0 g kg−1 in leaves and 12.8 g kg−1 in stems, approximately 19-fold higher than WT. Ramada OS lines accumulated 26.1 g kg−1 in leaves and 12.3 g kg−1 in stems, approximately 25-fold and 13-fold increases over WT, respectively. OS lines in TX430 exhibited an 18% reduction in biomass (8.4 vs. 9.9 Mg ha−1 for WT), while Ramada OS lines had similar WT biomass (18.3 vs. 19.9 Mg ha−1 for WT). Among TX430 OS lines, TxHO-2 achieved the highest TAG yield (190 kg ha−1), while RmHO-1 led the Ramada lines (335 kg ha−1) due to higher biomass and similar TAG concentration. Enhanced TAG accumulation increased N, P, and K removal in TX430 lines but not in Ramada lines. Structural carbohydrate and ash concentration were unaffected. Overall, results confirm vegetative lipid accumulation as a viable strategy for high-biomass sorghum, supporting its potential as a dual-purpose feedstock for SAF. Future work should focus on minimizing biomass yield penalties and improving nutrient use efficiency in oil sorghum systems.
Data for Nitrogen Dynamics and Physiological N Use Efficiency in High-biomass Sorghum
Illinois Data Bank · 2026-01-01
datasetOpen accessSenior authorImproving nitrogen (N) efficiency is essential for sustainable high-biomass sorghum (Sorghum bicolor L. Moench) production. This study evaluated leaf and stem N dynamics, canopy N remobilization, and physiological nitrogen use efficiency (pNUE) in two photoperiod-sensitive sorghum hybrids under two N rates (0 and 168 kg-N ha−1) across multiple environments in Texas and Illinois. Leaf N concentrations increased with plant height in the canopy with steeper gradients under low-N conditions, indicating enhanced N remobilization when N is limited. Stem tissue showed less variation in N concentration across canopy nodal positions, with within-plant differences ranging from 1.2 to 7.6 g kg−1, compared to 3.1 to 16.3 g kg−1 in leaves. While pNUE was generally higher under unfertilized conditions, it varied largely by site; however, genotypic differences were minimal within the given year. These results highlight the importance of integrating environmental and management factors into breeding and fertilization strategies to enhance N efficiency in high-biomass sorghum.
Climate-driven divergence in biophysical and economic impacts of agrivoltaics
Proceedings of the National Academy of Sciences · 2026-03-02 · 1 citations
articleOpen accessIncreasing global demands for food and energy necessitate innovative land-use solutions. Agrivoltaics, colocating solar photovoltaics with agriculture, shows promise, but its widespread adoption faces complex biophysical and economic trade-offs in a changing climate. Here, we develop an integrated biophysical-economic modeling framework to quantify how agrivoltaics affect biophysical and economic impacts across the Midwestern United States under both current and project climate conditions. We find strong regional divergences driven by climate gradients. In the humid eastern Midwest, solar panel shading limits photosynthesis, leading to reduced yields (maize -24%; soybean -16%) and lower farmers' profitability (maize -16%; soybean -2%) compared to conventional agriculture. Conversely, in the semiarid western region, shading alleviates heat and water stress, moderating yield reductions for maize (-12%) and even boosting soybean yields (+6%), resulting in improved economic returns (-6% for maize; +9% for soybean), for a scenario with 33% photovoltaic ground coverage ratio. Although agrivoltaics generate substantial electrical energy across all regions, high upfront installation costs challenge solar developers compared to standalone solar photovoltaics. However, our analysis identifies "win-win" opportunities where soybean-based agrivoltaics in the semiarid region produce economic benefits for both farmers and solar developers, highlighting the necessity for region-specific designs tailored to local climate conditions. Critically, future climate projections indicate eastward expansion of semiarid conditions, broadening areas where agrivoltaics can mitigate crop yield penalties (even boosting yield) and improve overall profitability, especially under high-emission scenarios. The results provide a mechanistic and economically integrated understanding essential for developing evidence-based and region-specific strategies to scale agrivoltaics in a changing climate.
Journal of Advances in Modeling Earth Systems · 2026-01-29 · 4 citations
articleOpen accessAbstract Agrivoltaics, combining agriculture with photovoltaic systems, offers a promising solution to address land‐use conflict between food and energy production. However, the complexities of agrivoltaics and its effects on the water‐energy‐carbon interactions remain poorly understood. In this study, we developed a process‐based agrivoltaic model within the Community Land model 5 to assess the impacts of agrivoltaics on water, energy, and carbon cycles. The model was validated using data from agrivoltaic sites in Illinois and Colorado, generally capturing spatiotemporal variations in light conditions, soil moisture, and biomass carbon. Simulation results suggest that agrivoltaics significantly impact water, energy, and carbon budgets at the patch and system levels for maize and soybean in Illinois and grass in Colorado (2000–2014). Our findings show that the impacts of agrivoltaics vary by climate conditions and plant types. In dry climates, rainfall redistribution and shading from agrivoltaics conserve soil moisture and enhance evapotranspiration, promoting greater carbon assimilation and soil carbon storage for C 3 grass. Conversely, in wetter regions, reduced solar radiation from shading becomes the dominant factor, lowering carbon assimilation and sequestration for maize and soybean. These results suggest that agrivoltaics can help mitigate drought impacts in arid environments. Our analysis of land equivalent ratios across different photovoltaic ground coverage ratios (PV GCR) shows that a medium PV GCR (60%) under “AgPV” deployment, where PV and plants share the same land, maximizes land‐use efficiency at the study sites. Our modeling study supports informed decision‐making to promote sustainable management of water, energy, and food resources amid environmental change.
Open MIND · 2026-01-01
datasetSenior authorUnderstanding how establishment practices influence the mechanisms underlying Miscanthus × giganteus (miscanthus) productivity and canopy development is critical for optimizing management. Data was collected during the juvenile (2011–2013) and mature (2024) phases of a long-term field experiment established in Urbana, Illinois, to evaluate the effects of propagation method (plug propagation [PP] and rhizome propagation [RP]), planting density (1.0, 0.75, and 0.25 plants m⁻²), and nitrogen application (0 and 67 kg N ha⁻¹) on end-of-season biomass yield, tiller mass, tiller density, and tiller height. Linear regression models identified the dominant predictors of yield across stand ages and management regimes. Planting density, nitrogen (N) application, and propagation method significantly influenced early yield and canopy development. During the juvenile phase, biomass yield was driven by tiller density due to canopy expansion; in the mature phase, yield became driven by tiller mass. The PP plots produced higher tiller density than the RP plots, resulting in faster canopy closure and higher juvenile-phase yields. Rhizome-propagated (RP) plots produced lower tiller density, but individual tillers were 3.3–6.4 g tiller−1 heavier than PP tillers. After the canopy reached equilibrium, the PP and RP yields were similar because greater RP tiller mass compensated for its lower tiller density. Higher planting density resulted in greater yield and tiller density during the second year (2012), but this effect was absent from the third year (2013) onward. In the juvenile phase, N fertilization enhanced yield by 1.6–3.4 Mg ha−1. Initiating fertilization in 2013 on unfertilized plots produced biomass similar to that in fertilized plots, suggesting yield recovery in the mature phase. These findings revealed that establishment strategies, including propagation method and planting density, influence juvenile miscanthus canopy development and productivity, transitioning from tiller-density- to mass-dominated yields, but not mature phase productivity.
Environmental Research Letters · 2026-02-10 · 1 citations
articleOpen accessAbstract Nitrogen (N) fertilizer supports global food production, but its use and overuse drive emissions of nitrous oxide (N 2 O), a potent and long-lived greenhouse gas. Understanding the drivers of N 2 O fluxes remains elusive, making it difficult to predict emissions in time and space and to develop and evaluate ways to lower emissions through management. Major scientific uncertainties underlying the understanding of the drivers of N 2 O fluxes identified in a workshop of N 2 O emissions experts include poor process-based understanding of controls on soil N 2 O emissions in the field; insufficient data to reduce uncertainty in N 2 O budgets from the field to regional scales, including N 2 O emission measurements and importantly, field-scale N balances; and high uncertainty in model predictions of soil N 2 O emissions across environmental and management conditions. To reduce these uncertainties, we present the concept of N 2 Onet, a global collaborative initiative to accelerate advances in N 2 O measurement, analyses, and mitigation. N 2 Onet will serve as an observational network of supersites with multi-scale measurements; a database hub for N 2 O flux and ancillary data; and a catalyst for community building, information sharing, and training. By coalescing and coordinating the global community of researchers, N 2 Onet will provide a roadmap for reducing N 2 O emissions from agriculture worldwide.
GCB Bioenergy · 2025-09-12 · 2 citations
articleOpen accessSenior authorCorrespondingABSTRACT The growing interest in high‐biomass sorghum ( Sorghum bicolor L. Moench), hereafter referred to as sorghum, as a bioenergy feedstock in the United States requires an understanding of geographical adaptation to identify the most suitable hybrids for the Midwest. In this study, 13 sorghum hybrids (H1–H13) were evaluated for biomass yield potential in central and southern IL over two growing seasons (2022 and 2023). In addition to biomass yield, the effects of nitrogen (N) fertilization on yield, nutrient removal (N, P, and K), and feedstock composition (cellulose, hemicellulose, lignin, and soluble fractions) were determined to identify the best‐performing sorghum hybrid across environmental gradients. The experimental design was a split‐plot arrangement within a randomized complete block design with four replications at each of two locations: N rates (0 and 112 kg‐N ha −1 ) as a whole plot factor and 13 sorghum hybrids as a subplot factor. As a result, complex genotypes (13 hybrids) by environment (2 sites and 2 years) and management (2 N rates) interactions were observed in biomass yield. The best hybrids at both sites were H1 (ATx2932/F10702_PSL) and H13 (TX08001), which were very photoperiod sensitive (PS). These hybrids produced superior biomass yield, and they also exhibited less nutrient removal and high energy‐rich feedstock compositions (cellulose, hemicellulose, and lignin). Biomass yield potential was associated with morphological and phenological traits according to environmental conditions. Low‐yielding hybrids were short‐stature (H5 and H6) with pollinators (F10801_PSL‐3dw and F10805_PSL‐3dw) that are recessive at the Dw3 locus. Moderate PS hybrids (H7, H8, H11, and H12) that produced grain panicles at harvest showed high biomass yield plasticity and excessive nutrient removal as they accumulated high K concentrations in biomass tissues and high N and P in grain panicles.
Smart Agricultural Technology · 2025-11-20 · 3 citations
articleOpen accessSenior authorCorrespondingAgrivoltaics (AV) systems create consistent shading throughout the crop growth cycle, making it essential to understand how these patterns affect crop growth and development. If shading leads to a yield penalty, identifying the specific yield components involved is key to optimizing management practices for sustainable co-production of electricity and crops. This study investigated how sorghum and soybean respond to shading within AV systems, with a specific focus on identifying the key yield components and grain yield affected by shading. Canopy biomass, grain yield, and yield components (grain number and weight) of sorghum ( Sorghum bicolor ) and soybean ( Glycine max ) grown under full sun conditions and photovoltaic (PV) panel shadings were compared. Source-sink manipulation was achieved through defoliation and de-graining in both sorghum and soybean to determine the key grain yield components affected by shading in the AV system. The yield penalty from PV shading was pronounced in soybean, whereas it was minor in sorghum. Enhancing sink size (i.e., grain number) in both crops was the key factor for minimizing the yield penalty caused by shading. Management practices after anthesis would be different for sorghum and soybean in AV systems. Increasing assimilates in sorghum during grain filling may help offset yield penalties by boosting grain weight. For soybeans, the focus should be on avoiding resource limitations during post-anthesis, as increased assimilates had a limited impact on grain weight. Both crops integrated with PV electricity generation increased the Land Equivalent Ratio (LER: 1.54 for sorghum and 1.23 for soybean) in AV systems. AV systems improved land use efficiency despite reduced crop yields due to shading, demonstrating their potential for sustainable food and energy co-production.
Bioresource Technology · 2025-09-11 · 1 citations
articleSenior authorEstimating Switchgrass Biomass Yield and Lignocellulose Composition from UAV-Based Indices
Crops · 2025-01-16 · 1 citations
articleOpen accessSenior authorInnovative methods for estimating commercial-scale switchgrass yields and feedstock quality are essential to optimize harvest logistics and biorefinery efficiency for sustainable aviation fuel production. This study utilized vegetation indices (VIs) derived from multispectral images to predict biomass yield and lignocellulose concentrations of advanced bioenergy-type switchgrass cultivars (“Liberty” and “Independence”) under two N rates (28 and 56 kg N ha−1). Field-scale plots were arranged in a randomized complete block design (RCBD) and replicated three times at Urbana, IL. Multispectral images captured during the 2021–2023 growing seasons were used to extract VIs. The results show that linear and exponential models outperformed partial least square and random forest models, with mid-August imagery providing the best predictions for biomass, cellulose, and hemicellulose. The green normalized difference vegetation index (GNDVI) was the best univariate predictor for biomass yield (R2 = 0.86), while a multivariate combination of the GNDVI and normalized difference red-edge index (NDRE) enhanced prediction accuracy (R2 = 0.88). Cellulose was best predicted using the NDRE (R2 = 0.53), whereas hemicellulose prediction was most effective with a multivariate model combining the GNDVI, NDRE, NDVI, and green ratio vegetation index (GRVI) (R2 = 0.44). These findings demonstrate the potential of UAV-based VIs for the in-season estimation of biomass yield and cellulose concentration.
Frequent coauthors
- 24 shared
Thomas Voigt
- 23 shared
Kaiyu Guan
- 13 shared
Colleen Zumpf
- 13 shared
Cheng‐Hsien Lin
University of Illinois Urbana-Champaign
- 13 shared
Chunhwa Jang
- 13 shared
Michael D. Casler
University of Wisconsin–Madison
- 12 shared
Arvid Boe
South Dakota State University
- 11 shared
A. Lane Rayburn
University of Illinois Urbana-Champaign
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